Skip to main content
All Dashboards COVID-19 Surveillance Ebola caused by Bundibugyo virus in DR Congo and Uganda Hantavirus — MV Hondius cruise ship Infectious Diseases — ISIN dashboard Influenza — regional surveillance Influenza and respiratory viruses Influenza Phylogeny (Nextstrain) SARS-CoV-2 Phylogeny (Nextstrain) Signals — anomaly detection Wastewater Monitoring
News
Home
africa anomaly detection czech moh czech republic early warning ebola elixir epidemiology genomics hantavirus hospitalisation img cas infectious diseases influenza news nextstrain niph phylogeny poliovirus regions release rsv sars-cov-2 statistics surveillance vaccination wastewater úzis

Pathogen Portal CZ

News

All news
3. 9. 2026 A new data layer and the Signals page Data pipeline v0.2.0 brings incidence per 100,000 population, a regional map, fresh Ebola data — and automated anomaly detection across 1,200 notified disease series. 2. 7. 2026 Pathogen Portal CZ is live We are launching the Czech national portal for pathogen surveillance — open access to infectious disease surveillance data.

Pathogen index

All dashboards
  • COVID-19 Surveillance Public source The SARS-CoV-2 epidemiological situation in the Czech Republic — daily cases, hospitalisations, testing and vaccination.
  • Ebola caused by Bundibugyo virus in DR Congo and Uganda AI-processed Current overview of the outbreak of Ebola disease caused by Bundibugyo virus in DR Congo and Uganda, as checked on 7 September 2026.
  • Hantavirus — MV Hondius cruise ship Our data Situation report on the Andes virus (hantavirus) outbreak linked to the MV Hondius cruise ship — overview, timeline, risk to the Czech Republic. Source: IMG CAS / UJEP.
  • Infectious Diseases — ISIN dashboard Public source Overview of notified infectious diseases in the Czech Republic 2018–2025 from ÚZIS — regional map, top diagnoses, age structure and seasonal trends.
  • Influenza — regional surveillance Public source Weekly laboratory detections of respiratory viruses by Czech region — from SZÚ/NRL weekly PDF reports, updated every week.
  • Influenza and respiratory viruses Public source Virological surveillance of influenza and respiratory viruses in the Czech Republic — seasonal overviews 2012–2026, NIPH/NRL data.
  • Influenza Phylogeny (Nextstrain) Public source external Phylogeny of seasonal influenza — H3N2, H1N1pdm and type B. Evolution of haemagglutinin and predictions for vaccine strain selection.
  • SARS-CoV-2 Phylogeny (Nextstrain) Public source external Phylogenetic evolution of SARS-CoV-2 in Europe including Czech sequences — an interactive tree of variants and their geographic spread.
  • Signals — anomaly detection Our data Automated screening of 1,200+ notified infectious disease time series (diagnosis × region, ÚZIS ISIN) for exceedances of the expected level using the Farrington/Noufaily method.
  • Wastewater Monitoring Public source external Surveillance of SARS-CoV-2 and polioviruses in municipal wastewater — an early warning signal for pathogen circulation at the population level.
Public source collected by the portal Our data produced or processed by us AI-processed written by an AI agent, expert-reviewed