COVID-19 SurveillanceThe SARS-CoV-2 epidemiological situation in the Czech Republic — daily cases, hospitalisations, testing and vaccination.
Ebola caused by Bundibugyo virus in DR Congo and UgandaCurrent overview of the outbreak of Ebola disease caused by Bundibugyo virus in DR Congo and Uganda, as checked on 21 October 2026.
Hantavirus — MV Hondius cruise shipSituation report on the Andes virus (hantavirus) outbreak linked to the MV Hondius cruise ship — overview, timeline, risk to the Czech Republic. Source: IMG CAS / UJEP.
Infectious Diseases — ISIN dashboardOverview of notified infectious diseases in the Czech Republic 2018–2025 from ÚZIS — regional map, top diagnoses, age structure and seasonal trends.
Influenza — regional surveillanceWeekly laboratory detections of respiratory viruses by Czech region — from SZÚ/NRL weekly PDF reports, updated every week.
Influenza and respiratory virusesVirological surveillance of influenza and respiratory viruses in the Czech Republic — seasonal overviews 2012–2026, NIPH/NRL data.
Influenza Phylogeny (Nextstrain) — opens an external sitePhylogeny of seasonal influenza — H3N2, H1N1pdm and type B. Evolution of haemagglutinin and predictions for vaccine strain selection.
SARS-CoV-2 Phylogeny (Nextstrain) — opens an external sitePhylogenetic evolution of SARS-CoV-2 in Europe including Czech sequences — an interactive tree of variants and their geographic spread.
Wastewater Monitoring — opens an external siteSurveillance of SARS-CoV-2 and polioviruses in municipal wastewater — an early warning signal for pathogen circulation at the population level.